Software
We've compiled a list of 11 free and paid alternatives to Cytoscape. The primary competitors include Gephi, Polinode. In addition to these, users also draw comparisons between Cytoscape and KeyLines Graph Visualization Toolkit, Wandora, Linkurious. Also you can look at other similar options here: Social Software.
We've compiled a list of 11 free and paid alternatives to Cytoscape. The primary competitors include Gephi, Polinode. In addition to these, users also draw comparisons between Cytoscape and KeyLines Graph Visualization Toolkit, Wandora, Linkurious. Also you can look at other similar options here: Social Software.
38
Gephi is an open-source software for visualizing and analyzing large networks graphs.
22
20
KeyLines is a JavaScript toolkit for building high-performance graph visualization applications...
14
Wandora is a general purpose information extraction, management and publishing application based on...
14
An on-premise graph visualization and analysis software to investigate complex connected data.
9
NodeXL is a free, open-source template for Microsoft® Excel® 2007 and 2010 that makes it...
7
Pathomx is a workflow-based tool for the analysis and visualisation of experimental data.
6
6
TouchGraph is the producer of data visualization software TouchGraph Navigator 2.
5
12
Cytoscape is an open source software platform for visualizing complex networks and integrating...
Cytoscape is an open source software platform for visualizing complex networks and integrating...
Windows
Linux
Mac
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Integration
Share your opinion about the software, leave a review and help make it even better!
Suggest Changes
Your Feedback
Your vote has been counted.
Do you have experience using this software?
