Software
We've compiled a list of 3 free and paid alternatives to Cytoscape. The primary competitors include Gephi, Polinode. In addition to these, users also draw comparisons between Cytoscape and Linkurious. Also you can look at other similar options here: Social Software.
We've compiled a list of 3 free and paid alternatives to Cytoscape. The primary competitors include Gephi, Polinode. In addition to these, users also draw comparisons between Cytoscape and Linkurious. Also you can look at other similar options here: Social Software.
Linux
Mac
Windows
Cytoscape is an open source software platform for visualizing complex networks and integrating these with any type of attribute data. A lot of plugins are available for various kinds of problem domains, including bioinformatics, social network analysis, and semantic web.
Cytoscape supports many use cases in molecular and systems biology, genomics, and proteomics:
Load molecular and genetic interaction data sets in many formats
Project and integrate global datasets and functional annotations
Establish powerful visual mappings across these data
Perform advanced analysis and modeling using Cytoscape plugins
Visualize and analyze human-curated pathway datasets such as Reactome or KEGG.
Integration
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